Stem-loop lja-MIR167

Accession

MI0010580

Description

Lotus japonicus lja-MIR167 precursor miRNA

Literature search

1 open access papers mention lja-MIR167
(1 sentences)

Sequence

861786 reads, 59996.0 reads per million, 9 experiments

guucgugcaccugcaauaguUGAAGCUGCCAGCAUGAUCUGAgcuuaccuucuuguaauaaugguaagaacAGAUCAUAUGGCAGCUUCACCuguugaauggaagcau
....((((.((..((((((.(((((((((((..((((((((..((((((.............))))))..)))))))).))))))))))).))))))...))..))))

Structure

guuc    -a  -ug      u           GC        Ag      uucuu 
    gugc  cc   caauag UGAAGCUGCCA  AUGAUCUG  cuuacc     g
    ||||  ||   |||||| |||||||||||  ||||||||  ||||||     u
    uacg  gg   guuguC ACUUCGACGGU  UACUAGAc  gaaugg     a
----    aa  uaa      C           -A        aa      uaaua 

Annotation confidence High

Genome context

Unknown

Mature lja-miR167-5p

• Accession: MIMAT0010087
• Description: Lotus japonicus lja-miR167-5p mature miRNA
• Sequence: 21 - UGAAGCUGCCAGCAUGAUCUGA - 42
• Evidence: not_experimental

Mature lja-miR167-3p

• Accession: MIMAT0054567
• Description: Lotus japonicus lja-miR167-3p mature miRNA
• Sequence: 72 - AGAUCAUAUGGCAGCUUCACC - 92
• Evidence: experimental ; unknown

References

1. PubMed ID: 19084500
   Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules
   "Wang Y, Li P, Cao X, Wang X, Zhang A, Li X"
   "Biochem Biophys Res Commun (2009) 378:799-803