Accession
MI0010534
Description
Physcomitrella patens
ppt-MIR2085 precursor miRNA
Sequence
397
reads,
17.0
reads per million, 10 experiments
aaaaucugaaagucguugaagcgCCUGCUUCGAUGGAUUGUGGGcuacuccuccguuguaguccACAAUCCAACAAUGCAGGCGCuuccacgaauuucaagauacuuguaacug
...((((((((.((((.(((((((((((...(.(((((((((((((((.........))))))))))))))).)...))))))))))).)))).)))).))))...........
...((((((((.((((.(((((((((((...(.(((((((((((((((.........))))))))))))))).)...))))))))))).)))).)))).))))...........
Structure
--------aaa - g u UUC A ucc
aucu gaaa ucgu gaagcgCCUGC G UGGAUUGUGGGcuac u
|||| |||| |||| ||||||||||| | ||||||||||||||| c
uaga cuuu agca cuuCGCGGACG C ACCUAACAccugaug c
gucaauguuca a a c UAA A uug
Annotation confidence
Medium
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Genome context
Chr18: 9486736-9486849 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR2085
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR2085-5p
| Accession | MIMAT0053781 |
| Description | Physcomitrella patens ppt-miR2085-5p mature miRNA |
| Sequence | 24 - CCUGCUUCGAUGGAUUGUGGG - 44 |
| Evidence |
experimental
unknown |
Mature ppt-miR2085-3p
| Accession | MIMAT0010019 |
| Description | Physcomitrella patens ppt-miR2085-3p mature miRNA |
| Sequence | 65 - ACAAUCCAACAAUGCAGGCGC - 85 |
| Evidence |
experimental
Illumina [1] |
References
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