Stem-loop ppt-MIR2084

Accession

MI0010533

Description

Physcomitrella patens ppt-MIR2084 precursor miRNA

Gene family

MIPF0000809; MIR2084

Sequence

caguuacaaguaucuugaaauucguggaagcgCCUGCAUUGUUGGAUUGUGGAcuacaacggaggaguagcccacaauccaucgaagcaggcgcuucaacgacuuucagauuuu
...........((((.((((.((((.(((((((((((.(((.((((((((((.((((.........)))).)))))))))).))).))))))))))).)))).))))))))...

Structure

caguuacaagu    u    u    g           A   U          A    aac 
           aucu gaaa ucgu gaagcgCCUGC UUG UGGAUUGUGG cuac   g
           |||| |||| |||| ||||||||||| ||| |||||||||| ||||   g
           uaga cuuu agca cuucgcggacg agc accuaacacc gaug   a
--------uuu    -    c    a           a   u          c    agg 

Annotation confidence Not enough data

Genome context

Chr18: 9486736-9486849 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR2084

Mature ppt-miR2084

• Accession: MIMAT0010018
• Description: Physcomitrella patens ppt-miR2084 mature miRNA
• Sequence: 33 - CCUGCAUUGUUGGAUUGUGGA - 53
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19096705
   Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development
   Cho SH, Addo-Quaye C, Coruh C, Arif MA, Ma Z, Frank W, Axtell MJ
   PLoS Genet (2008) 4:e1000314