Stem-loop ppt-MIR2079

Accession

MI0010531

Description

Physcomitrella patens ppt-MIR2079 precursor miRNA

Sequence

2848 reads, 123.0 reads per million, 10 experiments

auauaaguacuaauuaauuuaugCGUCAUCAACAUCAACUCUUCauaguuauuauauaaguacuuauauaauaacuaugaAGAGUUGAUGUUGAUGACGCAuaaaaacaucgauaaguaugau
......(((((.(((..((((((((((((((((((((((((((((((((((((((((((....))))))))))))))))))))))))))))))))))))))))))......))).)))))...

Structure

auauaa     a   ----aa                                          g 
      guacu auu      uuuaugCGUCAUCAACAUCAACUCUUCauaguuauuauauaa u
      ||||| |||      ||||||||||||||||||||||||||||||||||||||||||  
      uauga uag      aaauACGCAGUAGUUGUAGUUGAGAaguaucaauaauauauu a
---uag     a   cuacaa                                          c 

Annotation confidence High

Genome context

Chr07: 2829022-2829144 [+]

Mature ppt-miR2079-5p

• Accession: MIMAT0053778
• Description: Physcomitrella patens ppt-miR2079-5p mature miRNA
• Sequence: 24 - CGUCAUCAACAUCAACUCUUC - 44
• Evidence: experimental ; unknown

Mature ppt-miR2079-3p

• Accession: MIMAT0010016
• Description: Physcomitrella patens ppt-miR2079-3p mature miRNA
• Sequence: 81 - AGAGUUGAUGUUGAUGACGCA - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19096705
   Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development
   Cho SH, Addo-Quaye C, Coruh C, Arif MA, Ma Z, Frank W, Axtell MJ
   PLoS Genet (2008) 4:e1000314