Accession
MI0010530
Description
Physcomitrella patens
ppt-MIR2078 precursor miRNA
Sequence
656
reads,
27.0
reads per million, 10 experiments
ggaggauuacugauauauucuagcacggcaagagagguggcaagccucauguacAGGCACAGGCAAGCCAACCCUggggaucaacucguucaguugaacugagcuagcugagagGGUUGGCUUGCCUGUGCCUGUacaugagacugagccgagauuaaacccuagggaucgacucg
.((((((..(((......(((.((...)).)))....((((.((.((((((((((((((((((((((((((((((.....(((.((.(((((((...))))))).)).))).)))))))))))))))))))))))))))))).))..))))...........)))..)))..))).
.((((((..(((......(((.((...)).)))....((((.((.((((((((((((((((((((((((((((((.....(((.((.(((((((...))))))).)).))).)))))))))))))))))))))))))))))).))..))))...........)))..)))..))).
Structure
g -- ua auauauucuagcacggcaagagagg -a c gggga a c u gag gau cug uggc ag cucauguacAGGCACAGGCAAGCCAACCCU uca cu guucagu ||| ||| ||| |||| || |||||||||||||||||||||||||||||| ||| || ||||||| g cuc cua gau gccg uc gaguacaUGUCCGUGUCCGUUCGGUUGGga agu ga cgaguca g ag gg --------------cccaaauuaga ag a ----g c u a
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
Chr27: 5212048-5212223 [+]
Database links
Mature ppt-miR2078-5p
| Accession | MIMAT0053777 |
| Description | Physcomitrella patens ppt-miR2078-5p mature miRNA |
| Sequence | 55 - AGGCACAGGCAAGCCAACCCU - 75 |
| Evidence |
experimental
unknown |
Mature ppt-miR2078-3p
| Accession | MIMAT0010015 |
| Description | Physcomitrella patens ppt-miR2078-3p mature miRNA |
| Sequence | 115 - GGUUGGCUUGCCUGUGCCUGU - 135 |
| Evidence |
experimental
Illumina [1] |
References
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