Stem-loop ppt-MIR2077

Accession

MI0010529

Description

Physcomitrella patens ppt-MIR2077 precursor miRNA

Sequence

1093 reads, 48.0 reads per million, 10 experiments

uucgacgcugcuaucuugaauggaaauaugACGUGUUUAUGAGCUUAGUGGcugguaguuuccaaacaaccagccacuaagcUCAUAAACACGCCAUAUUUCCauucagguugaucucaacuga
................((((((((((((((.(((((((((((((((((((((((((.(((....))).))))))))))))))))))))))))).))))))))))))))(((((....)))))..

Structure

uucgacgcugcuaucu              A                         a   u 
                ugaauggaaauaug CGUGUUUAUGAGCUUAGUGGcuggu guu c
                |||||||||||||| ||||||||||||||||||||||||| |||  
                acuuaCCUUUAUAC GCACAAAUACUcgaaucaccgacca caa c
agucaacucuaguugg              C                         a   a 

Annotation confidence Low

Genome context

Chr13: 10758230-10758353 [+]

Mature ppt-miR2077-5p

• Accession: MIMAT0053776
• Description: Physcomitrella patens ppt-miR2077-5p mature miRNA
• Sequence: 31 - ACGUGUUUAUGAGCUUAGUGG - 51
• Evidence: experimental ; unknown

Mature ppt-miR2077-3p

• Accession: MIMAT0010014
• Description: Physcomitrella patens ppt-miR2077-3p mature miRNA
• Sequence: 83 - UCAUAAACACGCCAUAUUUCC - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19096705
   Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development
   Cho SH, Addo-Quaye C, Coruh C, Arif MA, Ma Z, Frank W, Axtell MJ
   PLoS Genet (2008) 4:e1000314