miRBase entry: bfl-mir-92c

Stem-loop bfl-mir-92c


Accession
MI0010524
Description
Branchiostoma floridae bfl-mir-92c precursor miRNA


Sequence

uagagggcagggagggaauuuugaagugauuguguuuguaaaauuuagcgguuuuguuuuuggcgggaaggucgggagaagaaacaauguuuccaaccgaUAUUGCACUUGUCCCGGCUUGCcugcugccgccaucuugcuccagacaugacuuugucacuucuuuauuuuaagccacccguucugcaguguuucuucuc
.(((((((((((.((((((...((((((((((((((((.........(((((.........((((((.(((((((((.(((...(((((((.......)))))))..))).))))))))).)))))))))))..........)))))))).....))))))))...)))........))).)))))).......))))).

Structure
u     -------      a   --------   uuu        -----        -uaaaauuua     uuuguuuuu      a         g   aaa       uc 
 agagg       gcaggg ggg        aau   gaagugau     uguguuug          gcggu         ggcggg aggucggga aag   caauguu  c
 |||||       |||||| |||        |||   ||||||||     ||||||||          |||||         |||||| ||||||||| |||   |||||||  a
 ucuuc       cgucuu ccc        uua   cuucacug     guacagac          cgccg         ucgucC UUCGGCCCU UUC   GUUAUag  a
c     uuuguga      g   accgaauu   uuu        uuuca        cucguucuac     ---------      G         G   -AC       cc 


Annotation confidence Not enough data
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Genome context
GG666522.1: 372242-372441 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bfl-mir-92c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bfl-miR-92c

Accession MIMAT0010010
Description Branchiostoma floridae bfl-miR-92c mature miRNA
Sequence 101 - UAUUGCACUUGUCCCGGCUUGC - 122
Evidence experimental
cloned [1]

References

  1. PubMed ID: 19196332
    Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution
    "Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L"
    "Evol Dev (2009) 11:41-49