miRBase entry: bfl-mir-2057

Stem-loop bfl-mir-2057

Accession

MI0010492

Description

Branchiostoma floridae bfl-mir-2057 precursor miRNA

Gene family

MIPF0001745; mir-2057

Sequence

cacgggUGAGAAGUUAGCCAACCAUCCGGcugguaugugcaacccggguggugguugacuucuuucucguuacgucucaaua
.(((((.(((((((((((((.((((((((...((....))...))))))))))))))))))))).)))))............

Structure

-----------c     U             A        cug  a 
            acggg GAGAAGUUAGCCA CCAUCCGG   gu u
            ||||| ||||||||||||| ||||||||   ||  
            ugcuc uucuucaguuggu ggugggcc   cg g
auaacucugcau     u             -        caa  u

Annotation confidence Not enough data

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Genome context

GG666509.1: 856161-856242 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bfl-mir-2057

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature bfl-miR-2057

Accession	MIMAT0009983
Description	Branchiostoma floridae bfl-miR-2057 mature miRNA
Sequence	7 - UGAGAAGUUAGCCAACCAUCCGG - 29
Evidence	experimental cloned [1]

References

PubMed ID: 19196332
Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution
"Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L"
"Evol Dev (2009) 11:41-49