miRBase entry: bfl-mir-252a

Stem-loop bfl-mir-252a


Accession
MI0010042
Description
Branchiostoma floridae bfl-mir-252a precursor miRNA


Sequence

agugauuguccugccccaugCUAAGUACUAGUGCCGCAGGUGUcuguuuauuguaccccugcagacuggugcuuaacguggaacagguaauaaugccaccc
.((((((((((((..(((((.(((((((((((.(.(((((.(((........).)).))))).)))))))))))).)))))..))))..)))))..)))..

Structure
-a   --     --    cc     C           G C     U  - ugu 
  gug  auugu  ccug  ccaug UAAGUACUAGU C GCAGG GU c   u
  |||  |||||  ||||  ||||| ||||||||||| | ||||| || |    
  cac  uaaua  ggac  ggugc auucgugguca g cgucc ca g   u
cc   cg     au    aa     a           - a     c  u uua 


Annotation confidence Not enough data
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Genome context
GG666517.1: 1038954-1039054 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bfl-mir-252a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bfl-miR-252a

Accession MIMAT0009498
Description Branchiostoma floridae bfl-miR-252a mature miRNA
Sequence 21 - CUAAGUACUAGUGCCGCAGGUGU - 43
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68