miRBase entry: bfl-mir-200b

Stem-loop bfl-mir-200b


Accession
MI0010036
Description
Branchiostoma floridae bfl-mir-200b precursor miRNA


Sequence

acaguuugggaucucggcaacaucuuaccaggcagcauuuaguuuuugaaaggaauacUAAUACUGUCUGGUAAUGAUGUUggugggguucaaacagu
...((((((.((((((.((((((((((((((((((...(((((.(((.....))).)))))..))))))))))).))))))).))))))))))))...

Structure
aca      g      g       -           cau     u   g 
   guuugg aucucg caacauc uuaccaggcag   uuagu uuu a
   |||||| |||||| ||||||| |||||||||||   ||||| ||| a
   caaacu uggggu gUUGUAG AAUGGUCUGUC   AAUca aag a
uga      -      g       U           -AU     u   g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GG666627.1: 355968-356065 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from bfl-mir-200b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bfl-miR-200b

Accession MIMAT0009492
Description Branchiostoma floridae bfl-miR-200b mature miRNA
Sequence 59 - UAAUACUGUCUGGUAAUGAUGUU - 81
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68