Stem-loop bfl-mir-71

Accession

MI0010020

Description

Branchiostoma floridae bfl-mir-71 precursor miRNA

Gene family

MIPF0000278; mir-71

Sequence

gcuauaguugccaccacauugUGAAAGACAUGGGUAGUGAGAUuuguaucaugaauuuauCCCAUUUCCCUGUCUUUCAACAagguguuggcaguuuagca
((((.((((((((.(((.((((((((((((.(((.((((.(((...............))).)))).))))))))))).)))).))).)))))))))))).

Structure

-    u        c   a    -        U   U    A   uuguau 
 gcua aguugcca cac uugU GAAAGACA GGG AGUG GAU      c
 |||| |||||||| ||| |||| |||||||| ||| |||| |||      a
 cgau uugacggu gug aACA CUUUCUGU CCC UUAC Cua      u
a    -        u   g    A        -   U    C   uuuaag 

Annotation confidence Not enough data

Genome context

GG666603.1: 5824839-5824939 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bfl-mir-71

Mature bfl-miR-71-5p

• Accession: MIMAT0009476
• Description: Branchiostoma floridae bfl-miR-71-5p mature miRNA
• Sequence: 22 - UGAAAGACAUGGGUAGUGAGAU - 43
• Evidence: experimental ; 454 [1]

Mature bfl-miR-71-3p

• Accession: MIMAT0019142
• Description: Branchiostoma floridae bfl-miR-71-3p mature miRNA
• Sequence: 61 - CCCAUUUCCCUGUCUUUCAACA - 82
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68


2. PubMed ID: 21210939
   microRNA complements in deuterostomes: origin and evolution of microRNAs
   "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
   "Evol Dev (2011) 13:15-27