miRBase entry: mmu-mir-1839

Stem-loop mmu-mir-1839


Accession
MI0009991
Symbol
MGI: Mir1839
Description
Mus musculus mmu-mir-1839 precursor miRNA

Literature search
5 open access papers mention mmu-mir-1839
(17 sentences)

Sequence

1048446 reads, 2633 reads per million, 107 experiments
gaaAAGGUAGAUAGAACAGGUCUUGuuugcaaaauaaauucaAGACCUACUUAUCUACCAACAGCcauugccu
.....(((((((((...((((((((..(.........)..))))))))..)))))))))..............

Structure
---------gaaAA         AAC        uu gca 
              GGUAGAUAG   AGGUCUUG  u   a
              |||||||||   ||||||||  |   a
              CCAUCUAUU   UCCAGAac  a   a
uccguuacCGACAA         -CA        uu aau 


Annotation confidence High
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Comments
This sequence was named mmu-mir-1980 in [1], but is a clear ortholog of the mir-1839 sequence published in dog (MIR:MI0008087), so is renamed here.

Genome context
chr7: 81529916-81529988 [+]

Database links

Mature mmu-miR-1839-5p

Accession MIMAT0009456
Description Mus musculus mmu-miR-1839-5p mature miRNA
Sequence 4 - AAGGUAGAUAGAACAGGUCUUG - 25
Evidence experimental
Illumina [1-2]
Database links
Predicted targets

Mature mmu-miR-1839-3p

Accession MIMAT0009457
Description Mus musculus mmu-miR-1839-3p mature miRNA
Sequence 43 - AGACCUACUUAUCUACCAACAGC - 65
Evidence experimental
Illumina [1-2]
Database links
Predicted targets

References

  1. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  2. PubMed ID: 18923076
    Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs
    "Babiarz JE, Ruby JG, Wang Y, Bartel DP, Blelloch R"
    "Genes Dev (2008) 22:2773-2785