Stem-loop sly-MIR319a

Accession

MI0009978

Description

Solanum lycopersicum sly-MIR319a precursor miRNA

Literature search

24 open access papers mention sly-MIR319a
(162 sentences)

Sequence

1120227 reads, 35198.0 reads per million, 82 experiments

gagcuucuuuaguccacacauggggaacgauaggguucaauUUGCUGCCGACUCAUUCAUCCAAauguugaggucuugauaaucgagugccaccucagcaacugagugaaugaagcgggaguacaaguugagucuugagcuuccuguaCUUGGACUGAAGGGAGCUCC
((((((((((((((((...(((((((.(..((((((((((((((((.(((..((((((((.((..((((((((((((((...)))))....)))))))))..)).))))))))..))).))..)))))))))))))).).)))))))...))))))))).))))))).

Structure

-       -         cac       a ga              --  G   AC        C  Aa         ----     u 
 gagcuuc uuuagucca   augggga c  uaggguucaauUUG  CU CCG  UCAUUCAU CA  uguugaggu    cuuga  
 ||||||| |||||||||   ||||||| |  ||||||||||||||  || |||  |||||||| ||  |||||||||    ||||| a
 CUCGAGG AAGUCAGGU   uguccuu g  guucugaguugaac  ga ggc  aguaagug gu  acgacucca    gagcu  
C       G         UCa       c -a              au  g   ga        a  ca         ccgu     a 

Annotation confidence Low

Genome context

Unknown

Mature sly-miR319a-5p

• Accession: MIMAT0055725
• Description: Solanum lycopersicum sly-miR319a-5p mature miRNA
• Sequence: 42 - UUGCUGCCGACUCAUUCAUCCAA - 64
• Evidence: experimental ; unknown

Mature sly-miR319a-3p

• Accession: MIMAT0009145
• Description: Solanum lycopersicum sly-miR319a-3p mature miRNA
• Sequence: 149 - CUUGGACUGAAGGGAGCUCC - 168
• Evidence: not_experimental

References

1. PubMed ID: 18602455
   Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill
   "Zhang J, Zeng R, Chen J, Liu X, Liao Q"
   "Gene (2008) 423:1-7