Stem-loop sly-MIR156a

Accession

MI0009971

Description

Solanum lycopersicum sly-MIR156a precursor miRNA

Literature search

39 open access papers mention sly-MIR156a
(211 sentences)

Sequence

2729123 reads, 55843.0 reads per million, 82 experiments

UUGACAGAAGAUAGAGAGCACuaaugaugauaugcuaauuucauucaauuugggcagcaaaagcaucucaauucauuuguGCUCUCUAUGCUUCUGUCAU
.((((((((((((((((((((.((((((((.(((((............((((.....))))))))).)))..))))).))))))))))).))))))))).

Structure

U         -           u     --   u     aauuucauucaa    g 
 UGACAGAAG AUAGAGAGCAC aauga  uga augcu            uuug g
 ||||||||| ||||||||||| |||||  ||| |||||            |||| c
 ACUGUCUUC UAUCUCUCGug uuacu  acu uacga            aaac a
U         G           u     ua   c     ------------    g 

Annotation confidence High

Comments

This sequence was named MIR157a in [1].

Genome context

chr6: 42851776-42851875 [-]

Mature sly-miR156a-5p

• Accession: MIMAT0009138
• Description: Solanum lycopersicum sly-miR156a-5p mature miRNA
• Sequence: 1 - UUGACAGAAGAUAGAGAGCAC - 21
• Evidence: not_experimental

Mature sly-miR156a-3p

• Accession: MIMAT0055721
• Description: Solanum lycopersicum sly-miR156a-3p mature miRNA
• Sequence: 81 - GCUCUCUAUGCUUCUGUCAU - 100
• Evidence: experimental ; unknown

References

1. PubMed ID: 18602455
   Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill
   "Zhang J, Zeng R, Chen J, Liu X, Liao Q"
   "Gene (2008) 423:1-7