Stem-loop bta-mir-885

Accession

MI0009904

Description

Bos taurus bta-mir-885 precursor miRNA

Literature search

3 open access papers mention bta-mir-885
(13 sentences)

Sequence

608 reads, 97 reads per million, 55 experiments

ccgcgcucucUCCAUUACACUACCCUGCCUCUucuccacgagaggcagcgggguguaguggauagagcacgggu
(((.(((((.(((((((((((.(((((((((((......))))))))).))))))))))))).))))).)))..

Structure

--   c     c           A  -         cu 
  ccg gcucu UCCAUUACACU CC CUGCCUCUu  c
  ||| ||||| ||||||||||| || |||||||||   
  ggc cgaga aggugaugugg gg gacggagag  c
ug   a     u           -  c         ca 

Annotation confidence Not enough data

Genome context

chr22: 55292168-55292241 [-]

Mature bta-miR-885

• Accession: MIMAT0009382
• Description: Bos taurus bta-miR-885 mature miRNA
• Sequence: 11 - UCCAUUACACUACCCUGCCUCU - 32
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125