Stem-loop bta-mir-877

Accession

MI0009903

Description

Bos taurus bta-mir-877 precursor miRNA mir-877

Gene
family

RF00912; mir-877

Literature search

10 open access papers mention bta-mir-877
(38 sentences)

Sequence

46812 reads, 21.0 reads per million, 320 experiments

gcucgagaagGUAGAGGAGAUGGCGCAGGGGACAcgggcuaagacugggggcucccgggaccccccaacaugugUCCUCUUCUCCCUCCUCCCAGguguacg
.........((..((((((..((.(.((((((((((.........((((((.((....)).))))))...)))))))))).).)))))))))).........

Structure

gcucgagaa  UA      AU  C C          ggcuaagac      c  c 
         gG  GAGGAG  GG G AGGGGACAcg         uggggg uc c
         ||  ||||||  || | ||||||||||         |||||| ||  
         CC  CUCCUC  CC C UCUCCUgugu         accccc ag g
gcaugugGA  --      --  U U          ------aca      c  g 

Annotation confidence High

Genome context

23: 28399539-28399640 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-877

Mature bta-miR-877-5p

• Accession: MIMAT0009381
• Description: Bos taurus bta-miR-877-5p mature miRNA
• Sequence: 11 - GUAGAGGAGAUGGCGCAGGGGACA - 34
• Evidence: not_experimental

Mature bta-miR-877-3p

• Accession: MIMAT0050891
• Description: Bos taurus bta-miR-877-3p mature miRNA
• Sequence: 75 - UCCUCUUCUCCCUCCUCCCAG - 95
• Evidence: not_experimental

References

1. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125