Stem-loop bta-mir-486

Accession

MI0009843

Description

Bos taurus bta-mir-486 precursor miRNA mir-486

Gene
family

RF00784; mir-486

Literature search

27 open access papers mention bta-mir-486
(177 sentences)

Sequence

41360 reads, 516 reads per million, 67 experiments

gccagcuuggaccugcguccucccugacgggUCCUGUACUGAGCUGCCCCGAGgcccuucgcugugcccagcucgggucagcucaguaccgggcgcgucggggugggagucggccggaagcagg
.((.((((((.((.((.(((.((((((((.((((.(((((((((((.((((((((.(......).)))....))))).))))))))))).)))).)))))))).))).)).))))..)))).))

Structure

g  a    --  a  u  g   u        g    U           C     ----   c uu 
 cc gcuu  gg cc gc ucc cccugacg gUCC GUACUGAGCUG CCCGA    Ggc c  c
 || ||||  || || || ||| |||||||| |||| ||||||||||| |||||    ||| |   
 gg cgaa  cc gg ug ggg ggggcugc cggg caugacucgac gggcu    ccg g  g
-  a    gg  -  c  a   u        g    c           u     cgac   u uc 

Annotation confidence Not enough data

Genome context

chr27: 36501847-36501970 [-]

Mature bta-miR-486

• Accession: MIMAT0009329
• Description: Bos taurus bta-miR-486 mature miRNA
• Sequence: 32 - UCCUGUACUGAGCUGCCCCGAG - 53
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125