Stem-loop bta-mir-330

Accession

MI0009803

Description

Bos taurus bta-mir-330 precursor miRNA mir-330

Gene
family

RF00770; mir-330

Literature search

2 open access papers mention bta-mir-330
(3 sentences)

Sequence

1231 reads, 13 reads per million, 66 experiments

cuucggcgaucacugccucucugggccugugucuuaggcucugcaagaucaaccgaGCAAAGCACACGGCCUGCAGAGAggcagcgcucagcuc
....(((((.(.(((((((((((((((((((.(((..((((.............)))).))))))).))))..))))))))))).).)).))).

Structure

cuuc   -  u a           --    -    u   ag    ugcaa 
    ggc ga c cugccucucug  ggcc ugug cuu  gcuc     g
    ||| || | |||||||||||  |||| |||| |||  ||||     a
    ucg cu g gacggAGAGAC  CCGG ACAC GAA  CGag     u
---c   a  c c           GU    C    -   -A    ccaac 

Annotation confidence High

Genome context

chr18: 53898387-53898480 [-]

Mature bta-miR-330

• Accession: MIMAT0009290
• Description: Bos taurus bta-miR-330 mature miRNA
• Sequence: 57 - GCAAAGCACACGGCCUGCAGAGA - 79
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125