Stem-loop bta-mir-28

Accession

MI0009785

Description

Bos taurus bta-mir-28 precursor miRNA mir-28

Gene
family

RF00655; mir-28

Literature search

6 open access papers mention bta-mir-28
(7 sentences)

Sequence

161192 reads, 1738 reads per million, 76 experiments

gguccuugcccucAAGGAGCUCACAGUCUAUUGAGuugccuuucugacuuucccacuagauugagagcuccuggagggcaggcacu
(((.(((((((((.((((((((.(((((((.((((((........))))....)).))))))).)))))))).))))))))).)))

Structure

   c         A        A       U  ----    gcc 
ggu cuugcccuc AGGAGCUC CAGUCUA UG    AGuu   u
||| ||||||||| |||||||| ||||||| ||    ||||    
uca ggacgggag uccucgag guuagau ac    ucag   u
   c         g        a       c  ccuu    ucu 

Annotation confidence High

Genome context

chr1: 79540068-79540153 [-]

Mature bta-miR-28

• Accession: MIMAT0009272
• Description: Bos taurus bta-miR-28 mature miRNA
• Sequence: 14 - AAGGAGCUCACAGUCUAUUGAG - 35
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125