Stem-loop bta-mir-223

Accession

MI0009782

Description

Bos taurus bta-mir-223 precursor miRNA mir-223

Gene
family

RF00664; mir-223

Literature search

28 open access papers mention bta-mir-223
(96 sentences)

Sequence

4670 reads, 397 reads per million, 72 experiments

cccagccuccugcagugccaugcuccguguauuugacaagcugaguuggacacuccauguaguagUGUCAGUUUGUCAAAUACCCCAaguguggcauaugccuagcag
....((.....(((((((((((((..(.((((((((((((((((.....((((.....)).))....)))))))))))))))).)..)))))))))).)))...))..

Structure

ccca  cuccu   -          cc u                guugg  -  u 
    gc     gca gugccaugcu  g guauuugacaagcuga     ac ac c
    ||     ||| ||||||||||  | ||||||||||||||||     || || c
    cg     cgu uacgguguga  C CAUAAACUGUUUGACU     ug ug a
--ga  --auc   a          AC C                -GUga  a  u 

Annotation confidence High

Genome context

chrX: 101046347-101046454 [-]

Mature bta-miR-223

• Accession: MIMAT0009270
• Description: Bos taurus bta-miR-223 mature miRNA
• Sequence: 66 - UGUCAGUUUGUCAAAUACCCCA - 87
• Evidence: experimental ; Array [3], qRT-PCR [3], cloned [4]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677


3. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


4. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125