miRBase entry: bta-mir-194-2

Stem-loop bta-mir-194-2


Accession
MI0009765
Description
Bos taurus bta-mir-194-2 precursor miRNA
Gene family
MIPF0000055; mir-194

Literature search
6 open access papers mention bta-mir-194-2
(11 sentences)

Sequence

486508 reads, 4433 reads per million, 75 experiments
uggcucccacccccUGUAACAGCAACUCCAUGUGGAaguaccucuaguuccaguggggcugcuguuaucuggggugggggcca
(((((((((((((..(((((((((.((((((.(((((.((....)).))))))))))).)))))))))..)))))))))))))

Structure
             cU         A      G     g  c 
uggcucccacccc  GUAACAGCA CUCCAU UGGAa ua c
|||||||||||||  ||||||||| |||||| ||||| ||  
accgggggugggg  uauugucgu ggggug accuu au u
             uc         c      -     g  c 


Annotation confidence High
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Genome context
chr29: 44018295-44018377 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from bta-mir-194-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-194

Accession MIMAT0009254
Description Bos taurus bta-miR-194 mature miRNA
Sequence 15 - UGUAACAGCAACUCCAUGUGGA - 36
Evidence experimental
cloned [1]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125