Stem-loop bta-mir-194a-2

Accession

MI0009765

Description

Bos taurus bta-mir-194a-2 precursor miRNA mir-194

Gene
family

RF00257; mir-194

Literature search

8 open access papers mention bta-mir-194a-2
(15 sentences)

Sequence

3899727 reads, 3226.0 reads per million, 321 experiments

uggcucccacccccUGUAACAGCAACUCCAUGUGGAaguaccucuaguuCCAGUGGGGCUGCUGUUAUCUGgggugggggcca
(((((((((((((..(((((((((.((((((.(((((.((....)).))))))))))).)))))))))..)))))))))))))

Structure

             cU         A      G     g  c 
uggcucccacccc  GUAACAGCA CUCCAU UGGAa ua c
|||||||||||||  ||||||||| |||||| ||||| ||  
accgggggugggG  UAUUGUCGU GGGGUG ACCuu au u
             UC         C      -     g  c 

Annotation confidence High

Genome context

29: 43114571-43114653 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-194a-2

Mature bta-miR-194a-5p

• Accession: MIMAT0009254
• Description: Bos taurus bta-miR-194a-5p mature miRNA
• Sequence: 15 - UGUAACAGCAACUCCAUGUGGA - 36
• Evidence: experimental ; cloned [1]

Mature bta-miR-194a-2-3p

• Accession: MIMAT0060854
• Description: Bos taurus bta-miR-194a-2-3p mature miRNA
• Sequence: 50 - CCAGUGGGGCUGCUGUUAUCUG - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125