miRBase entry: bta-mir-143

Stem-loop bta-mir-143


Accession
MI0009743
Description
Bos taurus bta-mir-143 precursor miRNA mir-143
Gene
family?
RF00683; mir-143

Literature search
37 open access papers mention bta-mir-143
(122 sentences)

Sequence

23056520 reads, 223303 reads per million, 69 experiments
gcguccugucucccagccugaggugcagugcugcaucucuggucaguugggagucUGAGAUGAAGCACUGUAGCUCGggaagggagaaguuguucugcagc
........((((((..((((((.(((((((((.((((((.((((......)).)).)))))).))))))))).))))))..)))))).(((((...)))))

Structure
------gcguccug      ag      g         g      u  -  ag 
              ucuccc  ccugag ugcagugcu caucuc gg uc  u
              ||||||  |||||| ||||||||| |||||| || ||   
              agaggg  ggGCUC AUGUCACGA GUAGAG cu ag  u
cgacgucuuguuga      aa      G         A      U  g  gg 


Annotation confidence Not enough data
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Genome context
chr7: 63079071-63079171 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-143
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-143

Accession MIMAT0009233
Description Bos taurus bta-miR-143 mature miRNA
Sequence 56 - UGAGAUGAAGCACUGUAGCUCG - 77
Evidence experimental
cloned [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125