Stem-loop bta-mir-130b

Accession

MI0009731

Description

Bos taurus bta-mir-130b precursor miRNA

Literature search

11 open access papers mention bta-mir-130b
(172 sentences)

Sequence

10107 reads, 100 reads per million, 68 experiments

ggccugccugacacucuuucccuguugcacuacugugcgccccuggcaagCAGUGCAAUGAUGAAAGGGCAUcggucaggcc
((((((.((((..(((((((..(((((((((.((.(((.......))))).)))))))))..)))))))..)))).))))))

Structure

      c    ca       cc         a  g   gc 
ggccug cuga  cucuuuc  uguugcacu cu ugc  c
|||||| ||||  |||||||  ||||||||| || |||  c
ccggac ggcU  GGGAAAG  GUAACGUGA ga acg  c
      u    AC       UA         C  -   gu 

Annotation confidence High

Genome context

chr17: 74305539-74305620 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-130b

Mature bta-miR-130b

• Accession: MIMAT0009224
• Description: Bos taurus bta-miR-130b mature miRNA
• Sequence: 51 - CAGUGCAAUGAUGAAAGGGCAU - 72
• Evidence: experimental ; Array [3], qRT-PCR [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125