Stem-loop bta-mir-128b

Accession

MI0009727

Description

Bos taurus bta-mir-128b precursor miRNA mir-128

Gene
family

RF00649; mir-128

Literature search

8 open access papers mention bta-mir-128b
(20 sentences)

Sequence

5504434 reads, 1640.0 reads per million, 320 experiments

ugugcagugggaagGGGGGCCGAGGCACUGUCCGAGAgugaguagcaggucUCACAGUGAACCGGUCUCUUUCccuacuguguc
...((((((((.((((((((((...((((((..((((.(........).))))))))))...)))))))))).))))))))...

Structure

ugu        a          AGG      CC    g gag 
   gcaguggg agGGGGGCCG   CACUGU  GAGA u   u
   |||||||| ||||||||||   ||||||  |||| |    
   ugucaucc UUUCUCUGGC   GUGACA  CUcu g   a
cug        C          CAA      --    g acg 

Annotation confidence High

Genome context

22: 9705215-9705298 [+]

Mature bta-miR-128b-5p

• Accession: MIMAT0050812
• Description: Bos taurus bta-miR-128b-5p mature miRNA
• Sequence: 15 - GGGGGCCGAGGCACUGUCCGAGA - 37
• Evidence: experimental ; Array [2], qRT-PCR [2], cloned [3]

Mature bta-miR-128b-3p

• Accession: MIMAT0062440
• Description: Bos taurus bta-miR-128b-3p mature miRNA
• Sequence: 52 - UCACAGUGAACCGGUCUCUUUC - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125