Stem-loop dvi-mir-316

Accession

MI0009512

Description

Drosophila virilis dvi-mir-316 precursor miRNA

Sequence

aaguucuagucgauuUGUCUUUUUCCGCUUACUGGcguuuuauugagcaacgACAGGAAAGGGAAAAAGGCGUAuuuacuaugaauuu
((((((((((.(((.(((((((((((.(((.(((.((((.........)))).)))..)))))))))))))).))).)))).))))))

Structure

      -    c   u           G   -A   G    uua 
aaguuc uagu gau UGUCUUUUUCC CUU  CUG cguu   u
|||||| |||| ||| ||||||||||| |||  ||| ||||   u
uuuaag auca uuA GCGGAAAAAGG GAA  GAC gcaa   g
      u    u   U           -   AG   A    cga 

Annotation confidence Not enough data

Genome context

scaffold_13049: 24266839-24266926 [+]

Mature dvi-miR-316-5p

• Accession: MIMAT0008945
• Description: Drosophila virilis dvi-miR-316-5p mature miRNA
• Sequence: 16 - UGUCUUUUUCCGCUUACUGG - 35
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-316-3p

• Accession: MIMAT0032071
• Description: Drosophila virilis dvi-miR-316-3p mature miRNA
• Sequence: 53 - ACAGGAAAGGGAAAAAGGCGUA - 74
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372