Stem-loop dvi-mir-283

Accession

MI0009501

Description

Drosophila virilis dvi-mir-283 precursor miRNA

Sequence

ccgauucucaaagguAAAUAUCAGCUGGUAAUUCUGGGagcaaugccuaaauaugaaacacuCGGAAUUUCAGUUGGUAUCGACuuuuuugaauu
..(((((..((((((..(((((((((((.(((((((((......................))))))))))))))))))))..))))))..)))))

Structure

cc     uc      AA           U         agcaaugccu 
  gauuc  aaaggu  AUAUCAGCUGG AAUUCUGGG          a
  |||||  ||||||  ||||||||||| |||||||||           
  uuaag  uuuuCA  UAUGGUUGACU UUAAGGCuc          a
--     uu      GC           -         acaaaguaua 

Annotation confidence Not enough data

Genome context

scaffold_12970: 2047663-2047757 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dvi-mir-283

Mature dvi-miR-283-5p

• Accession: MIMAT0008935
• Description: Drosophila virilis dvi-miR-283-5p mature miRNA
• Sequence: 16 - AAAUAUCAGCUGGUAAUUCUGGG - 38
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-283-3p

• Accession: MIMAT0032061
• Description: Drosophila virilis dvi-miR-283-3p mature miRNA
• Sequence: 63 - CGGAAUUUCAGUUGGUAUCGAC - 84
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372