miRBase entry: dsi-mir-5

Stem-loop dsi-mir-5

Accession

MI0009457

Description

Drosophila simulans dsi-mir-5 precursor miRNA

Gene family

MIPF0000309; mir-5

Sequence

uaAAAGGAACGAUCGUUGUGAUAUGaguuguucccaacauaucacagugauuuuccuuuauau
..(((((((.((((((((((((((..((((....)))))))))))))))))))))))))....

Structure

--ua       C              Ga    u 
    AAAGGAA GAUCGUUGUGAUAU  guug u
    ||||||| ||||||||||||||  ||||  
    uuuccuu uuagugacacuaua  caac c
uaua       -              --    c

Annotation confidence Not enough data

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Genome context

chr2R: 14254101-14254163 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from dsi-mir-5

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dsi-miR-5

Accession	MIMAT0008890
Description	Drosophila simulans dsi-miR-5 mature miRNA
Sequence	3 - AAAGGAACGAUCGUUGUGAUAUG - 25
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218