miRBase entry: dsi-mir-275

Stem-loop dsi-mir-275

Accession

MI0009446

Description

Drosophila simulans dsi-mir-275 precursor miRNA

Gene family

MIPF0000187; mir-275

Sequence

aagucuccuaccuugcgcgcuaaucagugaccggggcugguuuuuuauauacagUCAGGUACCUGAAGUAGCGCGCGugguggcagacau
..((((.(((((.(((((((((.((((..(((..(((((..(......)..))))).)))..))))..))))))))).))))).))))..

Structure

aa    c     u         -a    ug   gg     gu uu 
  gucu cuacc ugcgcgcua  ucag  acc  ggcug  u  u
  |||| ||||| |||||||||  ||||  |||  |||||  |   
  caga ggugg GCGCGCGAU  AGUC  UGG  CUgac  a  u
ua    c     u         GA    CA   -A     au ua

Annotation confidence Not enough data

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Genome context

chr2L: 7217369-7217458 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dsi-mir-275

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dsi-miR-275

Accession	MIMAT0008880
Description	Drosophila simulans dsi-miR-275 mature miRNA
Sequence	55 - UCAGGUACCUGAAGUAGCGCGCG - 77
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218