Stem-loop dsi-mir-311

Accession

MI0009422

Description

Drosophila simulans dsi-mir-311 precursor miRNA

Sequence

ucuagaucauuuuuCGGACGGUAUAUGAGUCAAUAUUuuuuuuuuuucgaauaUAUUGCACAUUCACCGGCCUGAaaauaucaaga
(((.(((.((((((.((.((((..(((.(.((((((.(((........))).))))))).)))..)))).)).))))))))).)))

Structure

   a   c      C  A    AU   A U      U   uuu 
ucu gau auuuuu GG CGGU  AUG G CAAUAU uuu   u
||| ||| |||||| || ||||  ||| | |||||| |||    
aga cua uaaaAG CC GCCA  UAC C GUUAUa aag   u
   a   -      U  G    CU   A -      u   cuu 

Annotation confidence Not enough data

Genome context

chr2R: 15132682-15132767 [-]

Clustered miRNAs

8 other miRNAs are < 10 kb from dsi-mir-311

Mature dsi-miR-311-3p

• Accession: MIMAT0008857
• Description: Drosophila simulans dsi-miR-311-3p mature miRNA
• Sequence: 54 - UAUUGCACAUUCACCGGCCUGA - 75
• Evidence: experimental ; Illumina [2]

Mature dsi-miR-311-5p

• Accession: MIMAT0037347
• Description: Drosophila simulans dsi-miR-311-5p mature miRNA
• Sequence: 15 - CGGACGGUAUAUGAGUCAAUAUU - 37
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250