Stem-loop dse-mir-281-2

Accession

MI0009344

Description

Drosophila sechellia dse-mir-281-2 precursor miRNA

Sequence

cgaauugugaaaugAAGAGAGCUAUCCGUCGACAGUcaaguuaagaccgauuguaauacUGUCAUGGAAUUGCUCUCUUUGUauaacauucg
(((((.((...(((((((((((..(((((.((((((..((((......)))).....)))))))))))...)))))))))))...)))))))

Structure

     u  gaa           -UA     C      ---ca    aa 
cgaau gu   augAAGAGAGC   UCCGU GACAGU     aguu  g
||||| ||   |||||||||||   ||||| ||||||     ||||   
gcuua ca   UGUUUCUCUCG   AGGUA CUGUca     uuag  a
     -  aua           UUA     -      uaaug    cc 

Annotation confidence Low

Genome context

scaffold_1: 5602761-5602852 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dse-mir-281-2

Mature dse-miR-281-2-5p

• Accession: MIMAT0009187
• Description: Drosophila sechellia dse-miR-281-2-5p mature miRNA
• Sequence: 15 - AAGAGAGCUAUCCGUCGACAGU - 36
• Evidence: not_experimental

Mature dse-miR-281-3p

• Accession: MIMAT0008783
• Description: Drosophila sechellia dse-miR-281-3p mature miRNA
• Sequence: 60 - UGUCAUGGAAUUGCUCUCUUUGU - 82
• Evidence: not_experimental

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218