miRBase entry: dgr-mir-288

Stem-loop dgr-mir-288


Accession
MI0009145
Description
Drosophila grimshawi dgr-mir-288 precursor miRNA


Sequence

ggccgugucguaauuagcugugcagaacguagcuggcgauaauuaaugacguuggucacguuggUUUCAUGUCGAUUUCAUUUCAUGacacggccg
(((((((((((((((.((((.((..(((((.(((((((...........))))))).))))).))..)).)).)))).......))))))))))).

Structure
-           -------    a  -  -u  ag     a       auaa 
 ggccgugucgu       aauu gc ug  gc  aacgu gcuggcg    u
 |||||||||||       |||| || ||  ||  ||||| |||||||    u
 ccggcacaGUA       UUAG UG AC  Ug  uugca ugguugc    a
g           CUUUACU    C  U  UU  -g     c       agua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold_15126: 6391674-6391769 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dgr-mir-288
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dgr-miR-288

Accession MIMAT0008600
Description Drosophila grimshawi dgr-miR-288 mature miRNA
Sequence 65 - UUUCAUGUCGAUUUCAUUUCAUG - 87
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218