miRBase entry: dan-mir-13b-1

Stem-loop dan-mir-13b-1

Accession

MI0008963

Description

Drosophila ananassae dan-mir-13b-1 precursor miRNA

Sequence

ccaugucguuaaaaggcuugugaccuuauguauuucgcaaucaUAUCACAGCCAUUUUGACGAGUuugg
(((..(((((((((((((.((((...((((.(((....))))))))))))))).)))))))))...)))

Structure

   -ug         -    u    ccu    u   u 
cca   ucguuaaaa ggcu guga   uaug auu c
|||   ||||||||| |||| ||||   |||| |||  
ggu   AGCAGUUUU CCGA CACU   AUac uaa g
   uUG         A    -    ---    -   c

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

scaffold_13340: 12827484-12827552 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dan-mir-13b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dan-miR-13b

Accession	MIMAT0008426
Description	Drosophila ananassae dan-miR-13b mature miRNA
Sequence	44 - UAUCACAGCCAUUUUGACGAGU - 65
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218