Stem-loop tca-mir-305

Accession

MI0008928

Description

Tribolium castaneum tca-mir-305 precursor miRNA

Literature search

2 open access papers mention tca-mir-305
(2 sentences)

Sequence

2034557 reads, 11706.0 reads per million, 34 experiments

cacaugucuAUUGUACUUCAUCAGGUGCUCUGGuauacuuuuuccCGACACCUGUUGGAGUGCACUAauuaugug
((((((.....(((((((((.((((((.((.((..........)).)))))))).))))))))).....))))))

Structure

      ucuAU         U      C  U  uaua 
cacaug     UGUACUUCA CAGGUG UC GG    c
||||||     ||||||||| |||||| || ||     
guguau     ACGUGAGGU GUCCAC AG cc    u
      uaAUC         U      -  C  uuuu 

Annotation confidence High

Genome context

ref|NC_007424.3|: 11129695-11129769 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from tca-mir-305

Mature tca-miR-305-5p

• Accession: MIMAT0008388
• Description: Tribolium castaneum tca-miR-305-5p mature miRNA
• Sequence: 10 - AUUGUACUUCAUCAGGUGCUCUGG - 33
• Evidence: experimental ; SOLID [2]

Mature tca-miR-305-3p

• Accession: MIMAT0019128
• Description: Tribolium castaneum tca-miR-305-3p mature miRNA
• Sequence: 46 - CGACACCUGUUGGAGUGCACUA - 67
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696