Stem-loop tca-mir-305

Accession

MI0008928

Description

Tribolium castaneum tca-mir-305 precursor miRNA

Gene family

MIPF0000158; mir-305

Literature search

1 open access papers mention tca-mir-305
(1 sentences)

Sequence

cacaugucuAUUGUACUUCAUCAGGUGCUCugguauacuuuuuccCGACACCUGUUGGAGUGCACUAauuaugug
((((((.....(((((((((.((((((.((.((..........)).)))))))).))))))))).....))))))

Structure

      ucuAU         U      C  u  uaua 
cacaug     UGUACUUCA CAGGUG UC gg    c
||||||     ||||||||| |||||| || ||     
guguau     ACGUGAGGU GUCCAC AG cc    u
      uaAUC         U      -  C  uuuu 

Annotation confidence Not enough data

Genome context

ChLG9: 10587469-10587543 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from tca-mir-305

Mature tca-miR-305-5p

• Accession: MIMAT0008388
• Description: Tribolium castaneum tca-miR-305-5p mature miRNA
• Sequence: 10 - AUUGUACUUCAUCAGGUGCUC - 30
• Evidence: experimental ; SOLID [2]

Mature tca-miR-305-3p

• Accession: MIMAT0019128
• Description: Tribolium castaneum tca-miR-305-3p mature miRNA
• Sequence: 46 - CGACACCUGUUGGAGUGCACUA - 67
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696