Stem-loop tca-mir-275

Accession

MI0008921

Description

Tribolium castaneum tca-mir-275 precursor miRNA

Sequence

gcuacgCGUGUUACCUCAGUACCUAGGCUGGgguuuuucgaaagUCAGGUACCUGAAGUAGCGCGCGcagc
(((.((((((((((.(((((((((.((((..((....))...))))))))).)))).)))))))))).)))

Structure

   a          C    -     A    -GG  u 
gcu cgCGUGUUAC UCAG UACCU GGCU   gg u
||| |||||||||| |||| ||||| ||||   ||  
cga GCGCGCGAUG AGUC AUGGA CUga   cu u
   c          A    C     -    aag  u 

Annotation confidence Low

Genome context

ChLG9: 10587608-10587678 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from tca-mir-275

Mature tca-miR-275-3p

• Accession: MIMAT0008379
• Description: Tribolium castaneum tca-miR-275-3p mature miRNA
• Sequence: 45 - UCAGGUACCUGAAGUAGCGCGCG - 67
• Evidence: experimental ; SOLID [2]

Mature tca-miR-275-5p

• Accession: MIMAT0019123
• Description: Tribolium castaneum tca-miR-275-5p mature miRNA
• Sequence: 7 - CGUGUUACCUCAGUACCUAGGCUGG - 31
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696