Stem-loop tca-mir-133

Accession

MI0008914

Description

Tribolium castaneum tca-mir-133 precursor miRNA

Literature search

1 open access papers mention tca-mir-133
(1 sentences)

Sequence

gcaaugugcagcuuuAGCUGGUUGAAUCCGGGUCAaauuguaaaugcuauUUGGUCCCCUUCAACCAGCUGUgguugacauugc
(((((((.(((((.((((((((((((...(((((((((.((....)).)))))).))).)))))))))))).))))))))))))

Structure

       g     u            UCC   -      u  a 
gcaaugu cagcu uAGCUGGUUGAA   GGG UCAaau gu a
||||||| ||||| ||||||||||||   ||| |||||| ||  
cguuaca guugg GUCGACCAACUU   CCC GGUUua cg a
       -     U            --C   U      u  u 

Annotation confidence Low

Genome context

ChLG5: 10226396-10226479 [-]

Mature tca-miR-133-3p

• Accession: MIMAT0008372
• Description: Tribolium castaneum tca-miR-133-3p mature miRNA
• Sequence: 51 - UUGGUCCCCUUCAACCAGCUGU - 72
• Evidence: experimental ; SOLID [2]

Mature tca-miR-133-5p

• Accession: MIMAT0019116
• Description: Tribolium castaneum tca-miR-133-5p mature miRNA
• Sequence: 16 - AGCUGGUUGAAUCCGGGUCA - 35
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696