Stem-loop tca-mir-92a

Accession

MI0008909

Description

Tribolium castaneum tca-mir-92a precursor miRNA

Literature search

1 open access papers mention tca-mir-92a
(6 sentences)

Sequence

77788 reads, 1290.0 reads per million, 34 experiments

cgcuuucaguAGUCCGUGAUGCGUGACAAUAUuuaguuuuuuucgaaUAUUGCACUAGUCCCGGCCUAUugagggcgc
((((((((((((.(((.(((..(((.((((((((..........)))))))))))..))).))).)))))))))))).

Structure

-            U   U   GC   A        aguu 
 cgcuuucaguAG CCG GAU  GUG CAAUAUuu    u
 |||||||||||| ||| |||  ||| ||||||||     
 gcgggaguUAUC GGC CUG  CAC GUUAUaag    u
c            C   C   AU   -        cuuu 

Annotation confidence High

Genome context

ref|NC_007423.3|: 3038993-3039070 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-92a

Mature tca-miR-92a-5p

• Accession: MIMAT0019111
• Description: Tribolium castaneum tca-miR-92a-5p mature miRNA
• Sequence: 11 - AGUCCGUGAUGCGUGACAAUAU - 32
• Evidence: experimental ; SOLID [2]

Mature tca-miR-92a-3p

• Accession: MIMAT0008367
• Description: Tribolium castaneum tca-miR-92a-3p mature miRNA
• Sequence: 48 - UAUUGCACUAGUCCCGGCCUAU - 69
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696