Stem-loop tca-mir-87a

Accession

MI0008908

Description

Tribolium castaneum tca-mir-87a precursor miRNA

Sequence

cagucguugacGGGCUUGAAAUCUUGCUCUCCCgugauuauuucguaaaggGUGAGCAAAGUUUCAGGUGUGucaaaggcuu
.((((.((((((.(((((((((.((((((.(((................))).)))))).))))))))).)))))).)))).

Structure

c    g      G         C      U   gugauua 
 aguc uugacG GCUUGAAAU UUGCUC CCC       u
 |||| |||||| ||||||||| |||||| |||        
 ucgg aacuGU UGGACUUUG AACGAG Ggg       u
u    a      G         A      U   aaaugcu 

Annotation confidence Not enough data

Genome context

ChLG6: 1651407-1651488 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-87a

Mature tca-miR-87a-3p

• Accession: MIMAT0008366
• Description: Tribolium castaneum tca-miR-87a-3p mature miRNA
• Sequence: 52 - GUGAGCAAAGUUUCAGGUGUG - 72
• Evidence: experimental ; SOLID [2]

Mature tca-miR-87a-5p

• Accession: MIMAT0019110
• Description: Tribolium castaneum tca-miR-87a-5p mature miRNA
• Sequence: 12 - GGGCUUGAAAUCUUGCUCUCCC - 33
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696