Stem-loop tca-mir-71

Accession

MI0008907

Description

Tribolium castaneum tca-mir-71 precursor miRNA

Literature search

6 open access papers mention tca-mir-71
(17 sentences)

Sequence

696515 reads, 12799.0 reads per million, 34 experiments

gucucuucuUGAAAGACAUGGGUAGUGAGAUguuuaauuaauaaauuuugUCUCACUACCUUGUCUUUCAUGUagcgau
(((.((.(.(((((((((.(((((((((((((((((.....)))))...))))))))))))))))))))).).)).)))

Structure

   u  u u         U            ---     a 
guc cu c UGAAAGACA GGGUAGUGAGAU   guuua u
||| || | ||||||||| ||||||||||||   ||||| u
uag ga G ACUUUCUGU UCCAUCACUCUg   uaaau a
   c  U U         -            uuu     a 

Annotation confidence High

Genome context

ref|NC_007418.3|: 560705-560783 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from tca-mir-71

Mature tca-miR-71-5p

• Accession: MIMAT0008365
• Description: Tribolium castaneum tca-miR-71-5p mature miRNA
• Sequence: 10 - UGAAAGACAUGGGUAGUGAGAU - 31
• Evidence: experimental ; SOLID [2]

Mature tca-miR-71-3p

• Accession: MIMAT0019109
• Description: Tribolium castaneum tca-miR-71-3p mature miRNA
• Sequence: 51 - UCUCACUACCUUGUCUUUCAUGU - 73
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696