Stem-loop ptr-mir-9-1

Accession

MI0008875

Description

Pan troglodytes ptr-mir-9-1 precursor miRNA

Literature search

1 open access papers mention ptr-mir-9-1
(1 sentences)

Sequence

167683 reads, 1286.0 reads per million, 23 experiments

cgggguugguuguuaUCUUUGGUUAUCUAGCUGUAUGAgugguguggagucuucAUAAAGCUAGAUAACCGAAAGUaaaaauaacccc
.(((((((....((((.(((((((((((((((.((((((.(.(....).).)))))).))))))))))))))).))))...)))))))

Structure

c       guug    C               G      u g g 
 gggguug    uuaU UUUGGUUAUCUAGCU UAUGAg g u u
 |||||||    |||| ||||||||||||||| |||||| | |  
 ccccaau    aaUG AAGCCAAUAGAUCGA AUAcuu u a g
-       -aaa    A               A      c g g 

Annotation confidence High

Genome context

chr1: 134550541-134550628 [-]

Mature ptr-miR-9-5p

• Accession: MIMAT0002275
• Description: Pan troglodytes ptr-miR-9-5p mature miRNA
• Sequence: 16 - UCUUUGGUUAUCUAGCUGUAUGA - 38
• Evidence: not_experimental

Mature ptr-miR-9-3p

• Accession: MIMAT0052200
• Description: Pan troglodytes ptr-miR-9-3p mature miRNA
• Sequence: 55 - AUAAAGCUAGAUAACCGAAAGU - 76
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70