Stem-loop ptr-mir-7-1

Accession

MI0008853

Description

Pan troglodytes ptr-mir-7-1 precursor miRNA

Sequence

50282 reads, 401.0 reads per million, 24 experiments

uuggauguuggccuaguucugugUGGAAGACUAGUGAUUUUGUUGUUUuuagauaacuaaaucgaCAACAAAUCACAGUCUGCCAUAUggcacaggccaugccucuaca
.((((.((((((((.((.((((((((.(((((.(((((((.(((((((((((....)))))..)))))))))))))))))).)))))))).)))))))).)).))))..

Structure

-u    u  -      a  u        A     A       U      --     a 
  ugga gu uggccu gu cugugUGG AGACU GUGAUUU GUUGUU  Uuuag u
  |||| || |||||| || |||||||| ||||| ||||||| ||||||  |||||  
  aucu cg accgga ca ggUAUACC UCUGA CACUAAA CAACag  aaauc a
ac    c  u      -  c        G     -       -      cu     a 

Annotation confidence High

Genome context

chr9: 61289459-61289567 [-]

Mature ptr-miR-7-1-5p

• Accession: MIMAT0060777
• Description: Pan troglodytes ptr-miR-7-1-5p mature miRNA
• Sequence: 24 - UGGAAGACUAGUGAUUUUGUUGUUU - 48
• Evidence: not_experimental

Mature ptr-miR-7-1-3p

• Accession: MIMAT0052225
• Description: Pan troglodytes ptr-miR-7-1-3p mature miRNA
• Sequence: 66 - CAACAAAUCACAGUCUGCCAUAU - 88
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70