Stem-loop ptr-mir-654

Accession

MI0008841

Description

Pan troglodytes ptr-mir-654 precursor miRNA

Literature search

4 open access papers mention ptr-mir-654
(8 sentences)

Sequence

802 reads, 7.0 reads per million, 24 experiments

gguaaguggaaagaUGGUGGGCCGCAGAACAUGUGCUgaguucgugccaUAUGUCUGCUGACCAUCACCUUuagaagccc
(((......((((.((((((.(.(((((.(((((((.........).))))))))))).).)))))).))))....))).

Structure

-   aagugg    a      G C     A      - Uga 
 ggu      aaag UGGUGG C GCAGA CAUGUG C   g
 |||      |||| |||||| | ||||| |||||| |   u
 ccg      uUUC ACUACC G CGUCU GUAUac g   u
c   --aaga    C      A U     -      c ugc 

Annotation confidence High

Genome context

chr14: 86288467-86288546 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from ptr-mir-654

Mature ptr-miR-654-5p

• Accession: MIMAT0052397
• Description: Pan troglodytes ptr-miR-654-5p mature miRNA
• Sequence: 15 - UGGUGGGCCGCAGAACAUGUGCU - 37
• Evidence: not_experimental

Mature ptr-miR-654-3p

• Accession: MIMAT0008304
• Description: Pan troglodytes ptr-miR-654-3p mature miRNA
• Sequence: 50 - UAUGUCUGCUGACCAUCACCUU - 71
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70