Stem-loop ptr-mir-548j

Accession

MI0008759

Description

Pan troglodytes ptr-mir-548j precursor miRNA

Literature search

1 open access papers mention ptr-mir-548j
(2 sentences)

Sequence

85 reads, 1.0 reads per million, 21 experiments

gggcagccagugaauaguuagcuggugCAAAAGUAAUUGCGGUCUUUGAUauuacuuucaaugGCAAAAACUGCAUUACUUUUGcaccagccuacuagaacgcugaguuca
((((...(((((..((((..(((((((((((((((((.(((((.((((.((((......)))).)))).))))))))))))))))))))))..))))...))))).)))).

Structure

-    agc     -aa    ua                 U     C    A    ac 
 gggc   cagug   uagu  gcuggugCAAAAGUAAU GCGGU UUUG Uauu  u
 ||||   |||||   ||||  ||||||||||||||||| ||||| |||| ||||   
 cuug   gucgc   auca  cgaccacGUUUUCAUUA CGUCA AAAC guaa  u
a    --a     aag    uc                 -     A    G    cu 

Annotation confidence High

Genome context

chr22: 13088316-13088426 [-]

Mature ptr-miR-548j-5p

• Accession: MIMAT0008224
• Description: Pan troglodytes ptr-miR-548j-5p mature miRNA
• Sequence: 28 - CAAAAGUAAUUGCGGUCUUUGAU - 50
• Evidence: not_experimental

Mature ptr-miR-548j-3p

• Accession: MIMAT0052389
• Description: Pan troglodytes ptr-miR-548j-3p mature miRNA
• Sequence: 64 - GCAAAAACUGCAUUACUUUUG - 84
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70