Stem-loop ptr-mir-539

Accession

MI0008742

Description

Pan troglodytes ptr-mir-539 precursor miRNA

Literature search

2 open access papers mention ptr-mir-539
(2 sentences)

Sequence

1702 reads, 16.0 reads per million, 20 experiments

uacuugaGGAGAAAUUAUCCUUGGUGUGUUcgcuuuauuuaugaugaAUCAUACAAGGACAAUUUCUUUUugaguau
((((((((((((((((.((((((.(((((((((.........).)))).)))))))))).)))))))))))))))).

Structure

-                A      G    -    - uuu 
 uacuugaGGAGAAAUU UCCUUG UGUG UUcg c   a
 |||||||||||||||| |||||| |||| |||| |   u
 augaguUUUUCUUUAA AGGAAC AUAC Aagu g   u
u                C      -    U    a uau 

Annotation confidence High

Genome context

chr14: 86295556-86295632 [+]

Clustered miRNAs

19 other miRNAs are < 10 kb from ptr-mir-539

Mature ptr-miR-539-5p

• Accession: MIMAT0008214
• Description: Pan troglodytes ptr-miR-539-5p mature miRNA
• Sequence: 8 - GGAGAAAUUAUCCUUGGUGUGUU - 30
• Evidence: not_experimental

Mature ptr-miR-539-3p

• Accession: MIMAT0052387
• Description: Pan troglodytes ptr-miR-539-3p mature miRNA
• Sequence: 48 - AUCAUACAAGGACAAUUUCUUUU - 70
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70