Stem-loop ptr-mir-520a

Accession

MI0008723

Description

Pan troglodytes ptr-mir-520a precursor miRNA

Literature search

1 open access papers mention ptr-mir-520a
(1 sentences)

Sequence

206 reads, 50.0 reads per million, 6 experiments

ucaggcugugacccuccagagggaaguacuuucuguugucugagagaaaagAAAGUGCUUCCCUUUGGACUGUugcgguuugag
((((((((((((..((((((((((((((((((((.((.((...)).)).))))))))))))))))))))..)))))))))))).

Structure

-            cc                    g  g  u 
 ucaggcugugac  uccagagggaaguacuuucu uu uc  
 ||||||||||||  |||||||||||||||||||| || || g
 aguuuggcguUG  AGGUUUCCCUUCGUGAAAga aa ag  
g            UC                    a  g  a 

Annotation confidence Not enough data

Genome context

chr19: 56039028-56039111 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from ptr-mir-520a

Mature ptr-miR-520a-3p

• Accession: MIMAT0008197
• Description: Pan troglodytes ptr-miR-520a-3p mature miRNA
• Sequence: 52 - AAAGUGCUUCCCUUUGGACUGU - 73
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70