Stem-loop ptr-mir-487a

Accession

MI0008683

Description

Pan troglodytes ptr-mir-487a precursor miRNA

Literature search

2 open access papers mention ptr-mir-487a
(5 sentences)

Sequence

564 reads, 7.0 reads per million, 14 experiments

guacuugaagaGUGGUUAUCCCUGCUGUGUUCGcugaauuuaugacgAAUCAUACAGGGACAUCCAGUUUuucaguauc
(((((.(((((.(((...((((((.(((((((((.........).)))).))))))))))...))).))))).))))).

Structure

-     u     G   UUA      C    -    - uga 
 guacu gaaga UGG   UCCCUG UGUG UUCG c   a
 ||||| ||||| |||   |||||| |||| |||| |   u
 uauga uuUUU ACC   AGGGAC AUAC AAgc g   u
c     c     G   UAC      -    U    a uau 

Annotation confidence High

Genome context

chr14: 86300680-86300758 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from ptr-mir-487a

Mature ptr-miR-487a-5p

• Accession: MIMAT0052368
• Description: Pan troglodytes ptr-miR-487a-5p mature miRNA
• Sequence: 12 - GUGGUUAUCCCUGCUGUGUUCG - 33
• Evidence: not_experimental

Mature ptr-miR-487a-3p

• Accession: MIMAT0008161
• Description: Pan troglodytes ptr-miR-487a-3p mature miRNA
• Sequence: 48 - AAUCAUACAGGGACAUCCAGUUU - 70
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70