Stem-loop ptr-mir-449a

Accession

MI0008670

Description

Pan troglodytes ptr-mir-449a precursor miRNA

Sequence

ugugugugaugagcUGGCAGUGUAUUGUUAGCUCGUugaauaugugaauggcaucggcuaacaugcaacugcugucuuauugcauauaca
(((((((((((((.(((((((((((.((((((.((.((..(((....))).)).)))))))))))).))))))).)))))))))))))..

Structure

--             c       -    U      U  U  aa   g 
  ugugugugaugag UGGCAGU GUAU GUUAGC CG ug  uau u
  ||||||||||||| ||||||| |||| |||||| || ||  |||  
  auauacguuauuc gucguca cgua caaucg gc ac  gua g
ac             u       a    -      -  u  -g   a 

Annotation confidence Not enough data

Genome context

chr5: 59474635-59474724 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptr-mir-449a

Mature ptr-miR-449a

• Accession: MIMAT0008149
• Description: Pan troglodytes ptr-miR-449a mature miRNA
• Sequence: 15 - UGGCAGUGUAUUGUUAGCUCGU - 36
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70