Stem-loop ptr-mir-423

Accession

MI0008663

Description

Pan troglodytes ptr-mir-423 precursor miRNA

Sequence

339644 reads, 3544.0 reads per million, 24 experiments

auaaaggaaguuaggcUGAGGGGCAGAGAGCGAGACUUUUCuauuuuccaaaAGCUCGGUCUGAGGCCCCUCAGUcuugcuuccuaccccgcg
....(((((((.((((((((((((..(((.((((.(((((.........))))))))).)))...)))))))))))).)))))))........

Structure

----auaa       u            -AG   G    A     Cua 
        aggaagu aggcUGAGGGGC   AGA CGAG CUUUU   u
        ||||||| ||||||||||||   ||| |||| |||||   u
        uccuucg ucUGACUCCCCG   UCU GCUC GAaaa   u
gcgcccca       u            GAG   G    -     ccu 

Annotation confidence High

Genome context

chr17: 26983568-26983660 [-]

Mature ptr-miR-423-5p

• Accession: MIMAT0052357
• Description: Pan troglodytes ptr-miR-423-5p mature miRNA
• Sequence: 17 - UGAGGGGCAGAGAGCGAGACUUUUC - 41
• Evidence: not_experimental

Mature ptr-miR-423-3p

• Accession: MIMAT0008142
• Description: Pan troglodytes ptr-miR-423-3p mature miRNA
• Sequence: 53 - AGCUCGGUCUGAGGCCCCUCAGU - 75
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70