Stem-loop ptr-mir-411

Accession

MI0008659

Description

Pan troglodytes ptr-mir-411 precursor miRNA

Literature search

1 open access papers mention ptr-mir-411
(1 sentences)

Sequence

5130 reads, 44.0 reads per million, 24 experiments

gguacuuggagagAUAGUAGACCGUAUAGCGUACGcuuuaucugugacgUAUGUAACACGGUCCACUAACccucaguaucaaauccauccccgag
((((((..(((.(.((((.((((((...((((((((.........).)))))))...)))))).)))).).)))))))))...............

Structure

---------------      ug   a A    A      AUA       - uuu 
               gguacu  gag g UAGU GACCGU   GCGUACG c   a
               ||||||  ||| | |||| ||||||   ||||||| |   u
               cuauga  cuc C AUCA CUGGCA   UGUAUgc g   c
gagccccuaccuaaa      --   c A    C      CAA       a ugu 

Annotation confidence High

Genome context

chr14: 86271826-86271920 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from ptr-mir-411

Mature ptr-miR-411-5p

• Accession: MIMAT0008138
• Description: Pan troglodytes ptr-miR-411-5p mature miRNA
• Sequence: 14 - AUAGUAGACCGUAUAGCGUACG - 35
• Evidence: not_experimental

Mature ptr-miR-411-3p

• Accession: MIMAT0052356
• Description: Pan troglodytes ptr-miR-411-3p mature miRNA
• Sequence: 50 - UAUGUAACACGGUCCACUAAC - 70
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70