Stem-loop ptr-mir-382

Accession

MI0008655

Description

Pan troglodytes ptr-mir-382 precursor miRNA

Literature search

2 open access papers mention ptr-mir-382
(5 sentences)

Sequence

19869 reads, 158.0 reads per million, 24 experiments

acuugaagaGAAGUUGUUCGUGGUGGAUUCGcuuuacuuaugacgAAUCAUUCACGGACAACACUUUUuucagua
..(((((((((.(((((((((((..(((((((.........).))))))..)))))))))))..)))))))))..

Structure

ac         -A           UG      - uuu 
  uugaagaGA  GUUGUUCGUGG  GAUUCG c   a
  |||||||||  |||||||||||  |||||| |   c
  gacuuUUUU  CAACAGGCACU  CUAAgc g   u
au         CA           UA      a uau 

Annotation confidence High

Genome context

chr14: 86302540-86302614 [+]

Clustered miRNAs

14 other miRNAs are < 10 kb from ptr-mir-382

Mature ptr-miR-382-5p

• Accession: MIMAT0008134
• Description: Pan troglodytes ptr-miR-382-5p mature miRNA
• Sequence: 10 - GAAGUUGUUCGUGGUGGAUUCG - 31
• Evidence: not_experimental

Mature ptr-miR-382-3p

• Accession: MIMAT0052354
• Description: Pan troglodytes ptr-miR-382-3p mature miRNA
• Sequence: 46 - AAUCAUUCACGGACAACACUUUU - 68
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70