Stem-loop ptr-mir-376a-2

Accession

MI0008647

Description

Pan troglodytes ptr-mir-376a-2 precursor miRNA

Literature search

1 open access papers mention ptr-mir-376a-2
(2 sentences)

Sequence

351 reads, 4.0 reads per million, 18 experiments

guauuuaaaAGGUAGAUUUUCCUUCUAUGguuacguguuugaugguuaAUCAUAGAGGAAAAUCCACGUuuucaguauc
(((((.((((.((.(((((((((.((((((((((((.....)))..)))))))))))))))))).)).)))).))))).

Structure

-     u    G  A         U         --   g 
 guauu aaaA GU GAUUUUCCU CUAUGguua  cgu u
 ||||| |||| || ||||||||| |||||||||  ||| u
 uauga uuuU CA CUAAAAGGA GAUACUAau  gua u
c     c    G  C         -         ug   g 

Annotation confidence Not enough data

Genome context

chr14: 86288317-86288395 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from ptr-mir-376a-2

Mature ptr-miR-376a-2-5p

• Accession: MIMAT0052347
• Description: Pan troglodytes ptr-miR-376a-2-5p mature miRNA
• Sequence: 10 - AGGUAGAUUUUCCUUCUAUG - 29
• Evidence: not_experimental

Mature ptr-miR-376a-3p

• Accession: MIMAT0008126
• Description: Pan troglodytes ptr-miR-376a-3p mature miRNA
• Sequence: 49 - AUCAUAGAGGAAAAUCCACGU - 69
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70